PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0136s0132.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 879aa    MW: 96075.9 Da    PI: 6.5991
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0136s0132.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19304403198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++  
  Kalax.0136s0132.2.p 304 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 390
                          99**************************556667788***************9989999999***9.********************4.. PP

                          S.SEE..EEEEE- CS
                   B3  87 r.sefelvvkvfr 98 
                          r  +++lv++ ++
  Kalax.0136s0132.2.p 391 RdPGGKLVIGSRK 403
                          4499999998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-29299404IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-20301401IPR015300DNA-binding pseudobarrel domain
CDDcd100175.23E-23302399No hitNo description
PROSITE profilePS5086311.462304405IPR003340B3 DNA binding domain
PfamPF023622.8E-16304403IPR003340B3 DNA binding domain
SMARTSM010192.3E-20304404IPR003340B3 DNA binding domain
PROSITE profilePS5105013.487560610IPR011124Zinc finger, CW-type
PfamPF074967.6E-8565607IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MGTAVCMNKS CRTSSSPEWK SGWPLRSGGL ATLCIDCGSA FENLVYCETF HSKESGWREC  60
DSCKKPIHCG CASSKPFIEF LDFGGACCTT CLKISGQHAD RGDEVSNDHS VQVLSNVGGL  120
QPNLGEVRIN GDIVGKGKNL QLGKSKIGGD PNGLHQIQNG ESNLSLGTMN GEDQSFGDLS  180
SNFLNLNSQS VGSPHFYIAG GNVTLGVPDG YEAIPQTSLN IGLSTPPDPS NFSAKFSSGV  240
VEGRELIKLP SPFQQSQRSR PRVARPPAEG RGRNQLLPRY WPRITDQELQ QLSGDLNSPV  300
VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGTP IRIQDAKGKE WTFQFRFWPN  360
NNSRMYVLEG VTPCIQSMQL QAGDTVIFSR RDPGGKLVIG SRKASISSDT QDGDIAALAN  420
GAHGESSFSD VSAACGYSGT FQSMAKNRDP HMHALPEQMT VADINLGWSK NNRHRGRIIE  480
SPIQKSMVKR PKNISSKSRR LLLHAEDVLE LKLTWDEAQD LLRAPPSIKP SIVTVEDYEI  540
EEFEEPPVLA KKTIFTVGAS GGQEQWAQCD FCSKWRRLPV DVLLPLKWTC AENFWDSCRC  600
SCSVPDEVGA KELENLLKHG KDLKRPRTLE NHKLVQDHEP SGLDALASAA VLGDNAGEAG  660
ETSVGATTKH PRHRPGCTCI VCIQPPSGKG KHHPTCTCNV CMTVKRRFKT LMFRKRIRQS  720
EREAEVSQKE PVLPKENYEL TNLKGDSRHE MLQSHPVEAD ADRTTQNLVQ VDQSSDNSDR  780
QLDLNSHPNR GSKCLEQEMN AAVSMTRLVH AAVLPLESHL KQHGLANSTL DASGPPQTIE  840
EGDYGVADED DTVQSGSVIK DEDRSSHANQ DQNVDEKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1430339013102DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017087.10.0High-level expression of sugar-inducible gene 2, putative isoform 1
RefseqXP_007017086.10.0High-level expression of sugar-inducible gene 2, putative isoform 1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A061GYW30.0A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRINGPOPTR_0016s14350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2